Ah I'm already aware this is not possible in true fullscreen, however I am in what is called a fullscreen-windowed mode. It is basically making the system look fullscreen while in windowed mode, at the cost of resources. I can get the IRC window on top with no trouble this way. But I am still looking for why it won't print things in the window I've made... apparently I need help with the scripting and then I'll work to make it transparent. ;3