okay, this:

$replace($chan(#chan1) $chan(#chan2),$chr(32),$chr(44))

will output list of active channels separated by comma, ready for the /msg command.

your command can then be:

/scon -at1 if (
$replace($chan(#chan1) $chan(#chan2),$chr(32),$chr(44))) msg $ifmatch <message>

I hope it's clear enough, anyway.