Unfortunately I have not been able to reproduce this issue. If you can please provide a step by step method of reproducing this, I will try to test it out here.
Loki12583's comment above may indicate why you are seeing this issue. If you can set up a small servers.ini file, with just the entries that are causing the issue, and post the servers.ini here, that may help in tracking down the issue.
That said, I am pretty sure that this issue has been discussed and explained before on the forums, although I cannot seem to find the post right now.
