Right, you said 'when i wake up the pc', "when" implies an event somehow, I can't guess you meant to manually execute the alias rather than automatically execute it..
If you used /scid -at1 to disconnect all connected status window, you can also use /scid to connect all disconnected status window, executing /server itself as Loki mentioned:
/scid -at2 server
Well I guess you are right, what I wrote wasn't very clear on that part.
As for the above works perfectly fine.
The only downside is that if I have 6 windows it will affect all 6 and looking at help I didn't see any easy way to limit that to specific ones (I guess there could be a way to get the ids of windows and specifically start the ones I want), but that's not really that important.
Thank you both for your help!