I know it seems overambitious, but I'm going to attempt to make a bot maker! And I am a little stuck. I know it sounds silly, but I'm stuck on how to name the bot once it connects to server (/server -m). I have a basic script that would connect to server in a new window, and then name the bot with /nick, but it changes nick of user that typed the joinbot command. How would I change the target user, so it changes the nick of the new bot and not the one which typed the command.

Use the -i switch for the /server command, also the -j switch.
/help /server

/server -m server [port] -i nick altnick email@host realname -j #channel1,#channel2

ah, ty